The main function to do this, HisPricesDates, downloads data between given dates as function inputs and is shown below.
HisPricesDates  = function( Granularity, DayAlign, TimeAlign, AccountToken, Instrument, Start, End ){
% a typical Oanda API call might look like  
% https://api-fxtrade.oanda.com/v1/candles?instrument=EUR_USD&granularity=D&start=2014-03-21&end=2014-04-21&candleFormat=midpoint&includeFirst=false
% which is slowly built up by using the R paste function, commented at end of each line below
  
  httpaccount  = "https://api-fxtrade.oanda.com"
  auth           = c(Authorization = paste("Bearer",AccountToken,sep=" "))
  QueryHistPrec  = paste(httpaccount,"/v1/candles?instrument=",sep="") % https://api-fxtrade.oanda.com/v1/candles?instrument=
  QueryHistPrec1 = paste(QueryHistPrec,Instrument,sep="")              % https://api-fxtrade.oanda.com/v1/candles?instrument=EUR_USD
  qstart = paste("start=",Start,sep="")                                % start=2014-03-21
  qend   = paste("end=",End,sep="")                                    % end=2014-04-21   
  qcandleFormat  = "candleFormat=midpoint"                             % candleFormat=midpoint
  qgranularity   = paste("granularity=",Granularity,sep="")            % granularity=D
  qdailyalignment    = paste("dailyAlignment=",DayAlign,sep="")        % dailyAlignment=0
  qincludeFirst = "includeFirst=false"                                 % includeFirst=false
  QueryHistPrec2 = paste(QueryHistPrec1,qgranularity,qstart,qend,qcandleFormat,qincludeFirst,qdailyalignment,sep="&")
  InstHistP = getURL(QueryHistPrec2,cainfo=system.file("CurlSSL","cacert.pem",package="RCurl"),httpheader=auth)
  InstHistPjson = fromJSON(InstHistP, simplifyDataFrame = TRUE)
  Prices        = data.frame(InstHistPjson[[3]])
  Prices$time   = paste(substr(Prices$time,1,10),substr(Prices$time,12,19), sep=" ")
  colnames(Prices) = c("TimeStamp","Open","High","Low","Close","TickVolume","Complete")
  Prices$TimeStamp = as.POSIXct(strptime(Prices$TimeStamp, "%Y-%m-%d %H:%M:%OS"),origin="1970-01-01",tz = "UTC")
  attributes(Prices$TimeStamp)$tzone = TimeAlign
  return(Prices)
  
}The daily update script, which is shown next,
% cd to the daily data directory
setwd("~/Documents/octave/oanda_data/daily")
all_current_historical_data_list = read.table("instrument_daily_update_file",header=FALSE,sep="",colClasses=c("character","Date","numeric") )
for( ii in 1 : nrow( all_current_historical_data_list ) ) {
  
  instrument = all_current_historical_data_list[ ii , 1 ]
  % read second column of dates in all_current_historical_data_list as a date index
  date_ix = as.Date( all_current_historical_data_list[ ii , 2 ] )
  todays_date = as.Date( Sys.time() )
  
  % download the missing historical data from date_ix to todays_date, if and only if, date_ix != todays_date
  if( date_ix + 1 != todays_date ) {
  
  new_historical_data = HisPricesDates( Granularity = "D", DayAlign, TimeAlign, AccountToken, instrument,
                         date_ix , todays_date )
  % the new_historical_data might only try to add incomplete OHLC data, in which case do not actually
  % want to update, so only update if we will be adding new, complete OHLC information  
  if ( nrow( new_historical_data ) >= 2 & new_historical_data[ 2 , 7 ] == TRUE ) {
  
    % now do some data manipulation
    % expect date of last line in Instrument_update_file == date of first line in new_historical_data 
    if ( date_ix == as.Date( new_historical_data[ 1 , 1 ] ) ) { % this is the case if true
       new_historical_data = new_historical_data[ -1 , ]       % so delete first row of new_historical_data
    }
  
    % similarly, expect last line of new_historical_data to be an incomplete OHLC bar
    if ( new_historical_data[ nrow( new_historical_data) , 7 ] == FALSE) {         % if so,
       new_historical_data = new_historical_data[ -nrow( new_historical_data) , ] % delete this last line
    }
    
    % append new_historical_data to the relevant raw data file
    write.table( new_historical_data , file = paste( instrument , "raw_OHLC_daily" , sep = "_" ) , row.names = FALSE , na = "" ,
                 col.names = FALSE , sep = "," , append = TRUE )
  
    added_data_length = nrow( new_historical_data )
    new_last_date = as.Date( new_historical_data[ added_data_length , 1 ] )
    
    % and amend Instrument_update file with lastest update information  
    all_current_historical_data_list[ ii , 2 ] = new_last_date
    all_current_historical_data_list[ ii , 3 ] = all_current_historical_data_list[ ii , 3 ] + added_data_length
  
    } % end of download if statement
  
  } % end of ( date_ix != todays_date ) if statement
  
} % end of for all_current_historical_data_list loop
% Write updated Instrument_update_file to file
write.table( all_current_historical_data_list , file = "instrument_daily_update_file" , row.names = FALSE , col.names = FALSE , na = "" )The intraday update script doe not have the checks the daily script has because I assume there will always be some new intraday data available for download. In this case, the last_update date is read from the "instrument_update_file" purely to act as an input to the above HisPricesDates function. As a result, this script involves some data manipulation to ensure that duplicate data is not printed to file. This script is shown next and is heavily commented to explain what is happening.
% cd to the hourly data directory
setwd("~/Documents/octave/oanda_data")
all_current_historical_data_list = read.table("instrument_hourly_update_file",header=FALSE,sep="",colClasses=c("character","Date","numeric") )
for( ii in 1 : nrow( all_current_historical_data_list ) ) {
   instrument = all_current_historical_data_list[ ii , 1 ]
   
   % read second column of dates in all_current_historical_data_list as a date index
   date_ix = as.Date( all_current_historical_data_list[ ii , 2 ] )
   
   todays_date = as.Date( Sys.time() )
   % download the missing historical data from date_ix to todays_date. If date_ix == todays_date, will download all
   % hourly bars for today only. 
   new_historical_data = HisPricesDates( Granularity = "H1", DayAlign, TimeAlign, AccountToken, instrument,
                          date_ix , todays_date + 1 )
   % the new_historical_data will almost certainly have incomplete hourly OHLC data in its last line,
   % so delete this incomplete OHLC information
   if ( new_historical_data[ nrow( new_historical_data ) , 7 ] == FALSE ) {
        new_historical_data = new_historical_data[ -nrow( new_historical_data ) , ]
   }
   
   % read the last line only of the current OHLC file for this instrument
   file = paste( instrument , "raw_OHLC_hourly" , sep = "_" ) % get the filename
   
   system_command = paste( "tail -1" , file , sep = " " )     % create a unix system command to read the last line of this file
   
   % read the file's last line
   old_historical_data = read.csv( textConnection( system( system_command , intern = TRUE ) ) , header = FALSE , sep = "," ,
                                    stringsAsFactors = FALSE )
   
   old_historical_data_end_date_time = old_historical_data[ 1 , 1 ]            % get the date value to be matched 
   
   new_historical_data_date_times = as.character( new_historical_data[ , 1 ] ) % vector to search for the above date value
   ix = charmatch( old_historical_data_end_date_time , new_historical_data_date_times ) % get the matching index value
   % delete that part of new_historical_data which is already contained in filename
   new_historical_data = new_historical_data[ -( 1 : ix ) , ]
   
   % append new_historical_data to the relevant raw data file
   write.table( new_historical_data , file = paste( instrument , "raw_OHLC_hourly" , sep = "_" ) , row.names = FALSE , na = "" ,
                 col.names = FALSE , sep = "," , append = TRUE )
   added_data_length = nrow( new_historical_data )                          % length of added new data
   new_last_date = as.Date( new_historical_data[ added_data_length , 1 ] )  % date of last update
   % and amend Instrument_update file with lastest update information
   all_current_historical_data_list[ ii , 2 ] = new_last_date
   all_current_historical_data_list[ ii , 3 ] = all_current_historical_data_list[ ii , 3 ] + added_data_length
} % end of for all_current_historical_data_list loop
% finally, write updated Instrument_update_file to file
write.table( all_current_historical_data_list , file = "instrument_hourly_update_file" , row.names = FALSE , col.names = FALSE , na = "" ) 
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